RequestFactory returning list with children of only the first item populated

We have a request for a collection of objects with children:

Request<List<AssayProxy>> assayRequest = requestFactory.assayRequest()
.fullFetchAssaysForStep(step.getPrimaryKey())
.with("well.designSummary.wells", "well.assaies",
"well.attachment", "sequenceBases", "exts", "warnings");

The children of the first object in the response list is populated
fine. E.g. we can getSequenceBases(). For other objects in the
response list the methods return null-not a lazy initialization error.

Any ideas?
Thanks.

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